| # | Mannschaft | Mannschaft | Mannschaft | Sp. | S | U | N | Tore | Diff. | Pkt. | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  | 1. FC Köln | Köln | KOE | 32 | 19 | 5 | 8 | 80:41 | 39 | 62 |
| 2 |  | SC Paderborn 07 | Paderborn | SCP | 32 | 15 | 9 | 8 | 71:46 | 25 | 54 |
| 3 |  | 1. FC Union Berlin | Union Berlin | FCU | 32 | 13 | 14 | 5 | 49:31 | 18 | 53 |
| 4 |  | Hamburger SV | Hamburg | HSV | 32 | 15 | 8 | 9 | 41:38 | 3 | 53 |
| 5 |  | 1. FC Heidenheim 1846 | Heidenheim | HDH | 32 | 13 | 10 | 9 | 47:40 | 7 | 49 |
| 6 |  | FC St. Pauli | St. Pauli | STP | 32 | 14 | 6 | 12 | 45:51 | -6 | 48 |
| 7 |  | Holstein Kiel | Holstein Kiel | KIE | 32 | 12 | 10 | 10 | 57:50 | 7 | 46 |
| 8 |  | Jahn Regensburg | Regensburg | SSV | 32 | 11 | 12 | 9 | 48:49 | -1 | 45 |
| 9 |  | Arminia Bielefeld | Bielefeld | DSC | 32 | 11 | 10 | 11 | 48:50 | -2 | 43 |
| 10 |  | SV Darmstadt 98 | Darmstadt | D98 | 32 | 12 | 7 | 13 | 44:50 | -6 | 43 |
| 11 |  | VfL Bochum | Bochum | BOC | 32 | 11 | 9 | 12 | 47:48 | -1 | 42 |
| 12 |  | Erzgebirge Aue | Aue | AUE | 32 | 11 | 6 | 15 | 42:45 | -3 | 39 |
| 13 |  | Dynamo Dresden | Dresden | SGD | 32 | 10 | 9 | 13 | 38:44 | -6 | 39 |
| 14 |  | SpVgg Greuther Fürth | Gr. Fürth | SGF | 32 | 9 | 11 | 12 | 34:54 | -20 | 38 |
| 15 |  | SV Sandhausen | Sandhausen | SVS | 32 | 9 | 10 | 13 | 43:47 | -4 | 37 |
| 16 |  | FC Ingolstadt 04 | Ingolstadt | FCI | 32 | 8 | 8 | 16 | 38:51 | -13 | 32 |
| 17 |  | 1. FC Magdeburg | Magdeburg | FCM | 32 | 6 | 12 | 14 | 34:49 | -15 | 30 |
| 18 |  | MSV Duisburg | Duisburg | MSV | 32 | 6 | 10 | 16 | 36:58 | -22 | 28 |
