| # | Mannschaft | Mannschaft | Mannschaft | Sp. | S | U | N | Tore | Diff. | Pkt. | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 |  | 1. FC Köln | Köln | KOE | 31 | 18 | 5 | 8 | 76:41 | 35 | 59 |
| 2 |  | SC Paderborn 07 | Paderborn | SCP | 31 | 15 | 9 | 7 | 71:44 | 27 | 54 |
| 3 |  | 1. FC Union Berlin | Union Berlin | FCU | 31 | 13 | 14 | 4 | 48:29 | 19 | 53 |
| 4 |  | Hamburger SV | Hamburg | HSV | 31 | 15 | 8 | 8 | 41:35 | 6 | 53 |
| 5 |  | 1. FC Heidenheim 1846 | Heidenheim | HDH | 31 | 13 | 10 | 8 | 45:37 | 8 | 49 |
| 6 |  | FC St. Pauli | St. Pauli | STP | 31 | 14 | 6 | 11 | 44:49 | -5 | 48 |
| 7 |  | Holstein Kiel | Holstein Kiel | KIE | 31 | 12 | 10 | 9 | 57:48 | 9 | 46 |
| 8 |  | Jahn Regensburg | Regensburg | SSV | 31 | 11 | 12 | 8 | 47:46 | 1 | 45 |
| 9 |  | Arminia Bielefeld | Bielefeld | DSC | 31 | 10 | 10 | 11 | 46:50 | -4 | 40 |
| 10 |  | SV Darmstadt 98 | Darmstadt | D98 | 31 | 11 | 7 | 13 | 42:49 | -7 | 40 |
| 11 |  | VfL Bochum | Bochum | BOC | 31 | 10 | 9 | 12 | 43:46 | -3 | 39 |
| 12 |  | SpVgg Greuther Fürth | Gr. Fürth | SGF | 31 | 9 | 11 | 11 | 34:50 | -16 | 38 |
| 13 |  | Erzgebirge Aue | Aue | AUE | 31 | 10 | 6 | 15 | 39:44 | -5 | 36 |
| 14 |  | Dynamo Dresden | Dresden | SGD | 31 | 9 | 9 | 13 | 36:43 | -7 | 36 |
| 15 |  | SV Sandhausen | Sandhausen | SVS | 31 | 8 | 10 | 13 | 40:45 | -5 | 34 |
| 16 |  | 1. FC Magdeburg | Magdeburg | FCM | 31 | 6 | 12 | 13 | 32:45 | -13 | 30 |
| 17 |  | FC Ingolstadt 04 | Ingolstadt | FCI | 31 | 7 | 8 | 16 | 35:51 | -16 | 29 |
| 18 |  | MSV Duisburg | Duisburg | MSV | 31 | 5 | 10 | 16 | 34:58 | -24 | 25 |
